Having the same problem on some of my older pedals (PH1, HM2 & SD1) where the LED is weak when powered on a boss 9v power supply but bright on batteries. It also adversely affects the tone of the pedal too.
I have tried replacing the zener diode at the LED, dioode at the +ve & -ve side of the adaptor, the 100uF capacitor but nothing works.
Hope that someone can advise what is the problem. Thanks..